1	Course Title:	COMPUTATIONAL GENOMICS
2	Course Code:	BMB4020
3	Type of Course:	Optional
4	Level of Course:	First Cycle
5	Year of Study:	4
6	Semester:	8
7	ECTS Credits Allocated:	5
8	Theoretical (hour/week):	3
9	Practice (hour/week) :	0
10	Laboratory (hour/week) :	0
11	Prerequisites:
12	Recommended optional programme components:	None
13	Language:	Turkish
14	Mode of Delivery:	Face to face
15	Course Coordinator:	Doç. Dr. GIYASETTİN ÖZCAN
16	Course Lecturers:
17	Contactinformation of the Course Coordinator:	Bilgisayar Müh. Bölüm Binası, 1. kat, oda 107 Tel.:+90 (224) 294 2792 email: gozcan at uludag.edu.tr
18	Website:
19	Objective of the Course:	This course aims to provide suitable tools and methods for solving functional genomic problems in computational terms.
20	Contribution of the Course to Professional Development

21

Learning Outcomes:

1 Students learn the algorithms which are used Mechanism of Transcriptional Regulation.; 2 Students learn Predictive Network Models of Transcriptional Regulation.; 3 Learns R programming and genomic computing techniques.;

22	Course Content:

Week	Theoretical	Practical
1	Genetics, biological databases, and high-throughput data sources
2	R, Bioconductor
3	Python, Biopyhton
4	Alignment against database, BLAST
5	Probabilistic algorithms
6	Genome Variance Analysis
7	GEO database
8	Phylogeny Algorithms
9	Mikrodizi teknolojisi
10	Clustering techniques
11	Hidden Markov Modelleri
12	Biological networks
13	Secondary prediction
14	Protein structure prediction

23	Textbooks, References and/or Other Materials:	M. Zvelebil and J. O. Baum, Understanding Bioinformatics, Garland Science, 2008
24	Assesment

TERM LEARNING ACTIVITIES	NUMBER	PERCENT
Midterm Exam	1	25
Quiz	0	0
Homeworks, Performances	2	15
Final Exam	1	60
Total	4	100
Contribution of Term (Year) Learning Activities to Success Grade		40
Contribution of Final Exam to Success Grade		60
Total		100
Measurement and Evaluation Techniques Used in the Course
Information

25

ECTS / WORK LOAD TABLE

Activites	NUMBER	TIME [Hour]	Total WorkLoad [Hour]
Theoretical	14	3	42
Practicals/Labs	0	0	0
Self Study and Preparation	0	0	0
Homeworks, Performances	2	19	38
Projects	0	0	0
Field Studies	0	0	0
Midtermexams	1	50	50
Others	0	0	0
Final Exams	1	50	50
Total WorkLoad			180
Total workload/ 30 hr			6
ECTS Credit of the Course			6

26	CONTRIBUTION OF LEARNING OUTCOMES TO PROGRAMME QUALIFICATIONS
PQ1 PQ2 PQ3 PQ4 PQ5 PQ6 PQ7 PQ8 PQ9 PQ10 PQ11 PQ12 LO1 0 0 0 0 0 0 0 0 0 0 0 0 LO2 0 0 0 0 0 0 0 0 0 0 0 0 LO3 0 0 0 0 0 0 0 0 0 0 0 0

LO: Learning Objectives

PQ: Program Qualifications

Contribution Level:

1 Very Low

2 Low

3 Medium

4 High

5 Very High